Index _ | A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | Q | R | S | T | U | V | W _ __init__() (scitacean.datablock.OrigDatablock method) (scitacean.Dataset method) (scitacean.dataset.DatablockUploadModels method) (scitacean.DatasetType method) (scitacean.FileUploadError method) (scitacean.IntegrityError method) (scitacean.model.Attachment method) (scitacean.model.DatasetType method) (scitacean.model.DownloadAttachment method) (scitacean.model.DownloadDatablock method) (scitacean.model.DownloadDataFile method) (scitacean.model.DownloadDataset method) (scitacean.model.DownloadHistory method) (scitacean.model.DownloadInstrument method) (scitacean.model.DownloadLifecycle method) (scitacean.model.DownloadMeasurementPeriod method) (scitacean.model.DownloadOrigDatablock method) (scitacean.model.DownloadProposal method) (scitacean.model.DownloadRelationship method) (scitacean.model.DownloadSample method) (scitacean.model.DownloadTechnique method) (scitacean.model.History method) (scitacean.model.Instrument method) (scitacean.model.Lifecycle method) (scitacean.model.MeasurementPeriod method) (scitacean.model.Proposal method) (scitacean.model.Relationship method) (scitacean.model.Sample method) (scitacean.model.Technique method) (scitacean.model.UploadAttachment method) (scitacean.model.UploadDatablock method) (scitacean.model.UploadDataFile method) (scitacean.model.UploadDerivedDataset method) (scitacean.model.UploadMeasurementPeriod method) (scitacean.model.UploadOrigDatablock method) (scitacean.model.UploadProposal method) (scitacean.model.UploadRawDataset method) (scitacean.model.UploadRelationship method) (scitacean.model.UploadSample method) (scitacean.model.UploadTechnique method) (scitacean.PID method) (scitacean.Profile method) (scitacean.RemotePath method) (scitacean.ScicatCommError method) (scitacean.ScicatLoginError method) (scitacean.testing.backend.config.SciCatAccess method) (scitacean.testing.backend.config.ScicatCredentials method) (scitacean.testing.backend.config.ScicatUser method) (scitacean.testing.client.FakeClient method) (scitacean.testing.client.FakeScicatClient method) (scitacean.testing.transfer.FakeDownloadConnection method) (scitacean.testing.transfer.FakeFileTransfer method) (scitacean.testing.transfer.FakeUploadConnection method) (scitacean.Thumbnail method) (scitacean.transfer.copy.CopyFileTransfer method) (scitacean.transfer.link.LinkFileTransfer method) (scitacean.transfer.select.SelectFileTransfer method) (scitacean.transfer.sftp.SFTPFileTransfer method) (scitacean.typing.DownloadConnection method) (scitacean.typing.Downloader method) (scitacean.typing.FileTransfer method) (scitacean.typing.UploadConnection method) (scitacean.typing.Uploader method) (scitacean.util.formatter.DatasetPathFormatter method) A access_groups (scitacean.datablock.OrigDatablock property) add_attachment() (scitacean.Dataset method) add_files() (scitacean.datablock.OrigDatablock method) (scitacean.Dataset method) add_local_files() (scitacean.Dataset method) add_orig_datablock() (scitacean.Dataset method) add_pytest_options() (in module scitacean.testing.backend) as_new() (scitacean.Dataset method) Attachment (class in scitacean.model) attachments (scitacean.Dataset property) B backend_enabled() (in module scitacean.testing.backend) C call_endpoint() (scitacean.client.ScicatClient method) (scitacean.testing.client.FakeScicatClient method) checksum() (scitacean.File method) checksum_algorithm (scitacean.File attribute) checksum_of_file() (in module scitacean.filesystem) Client (class in scitacean) client() (in module scitacean.testing.backend.fixtures) configure() (in module scitacean.testing.backend) connect_for_download() (scitacean.testing.transfer.FakeFileTransfer method) (scitacean.transfer.copy.CopyFileTransfer method) (scitacean.transfer.link.LinkFileTransfer method) (scitacean.transfer.select.SelectFileTransfer method) (scitacean.transfer.sftp.SFTPFileTransfer method) (scitacean.typing.Downloader method) connect_for_upload() (scitacean.testing.transfer.FakeFileTransfer method) (scitacean.transfer.copy.CopyFileTransfer method) (scitacean.transfer.link.LinkFileTransfer method) (scitacean.transfer.select.SelectFileTransfer method) (scitacean.transfer.sftp.SFTPFileTransfer method) (scitacean.typing.Uploader method) construct() (in module scitacean.model) CopyFileTransfer (class in scitacean.transfer.copy) create_attachment_for_dataset() (scitacean.client.ScicatClient method) (scitacean.testing.client.FakeScicatClient method) create_dataset_model() (scitacean.client.ScicatClient method) (scitacean.testing.client.FakeScicatClient method) create_orig_datablock() (scitacean.client.ScicatClient method) (scitacean.testing.client.FakeScicatClient method) create_proposal_model() (scitacean.client.ScicatClient method) (scitacean.testing.client.FakeScicatClient method) create_sample_model() (scitacean.client.ScicatClient method) (scitacean.testing.client.FakeScicatClient method) created_at (scitacean.datablock.OrigDatablock property) created_by (scitacean.datablock.OrigDatablock property) creation_time (scitacean.File property) credentials (scitacean.testing.backend.config.ScicatUser property) D datablock_id (scitacean.datablock.OrigDatablock property) DatablockUploadModels (class in scitacean.dataset) Dataset (class in scitacean) DatasetPathFormatter (class in scitacean.util.formatter) datasets() (in module scitacean.testing.strategies) DatasetType (class in scitacean) (class in scitacean.model) decoded_data() (scitacean.Thumbnail method) derive() (scitacean.Dataset method) download_attachments_for() (scitacean.Client method) download_file() (scitacean.testing.transfer.FakeDownloadConnection method) download_files() (scitacean.Client method) (scitacean.testing.transfer.FakeDownloadConnection method) (scitacean.typing.DownloadConnection method) download_model_type() (scitacean.model.Attachment class method) (scitacean.model.History class method) (scitacean.model.Instrument class method) (scitacean.model.Lifecycle class method) (scitacean.model.MeasurementPeriod class method) (scitacean.model.Proposal class method) (scitacean.model.Relationship class method) (scitacean.model.Sample class method) (scitacean.model.Technique class method) DownloadAttachment (class in scitacean.model) DownloadConnection (class in scitacean.typing) DownloadDatablock (class in scitacean.model) DownloadDataFile (class in scitacean.model) DownloadDataset (class in scitacean.model) downloaded() (scitacean.File method) Downloader (class in scitacean.typing) DownloadHistory (class in scitacean.model) DownloadInstrument (class in scitacean.model) DownloadLifecycle (class in scitacean.model) DownloadMeasurementPeriod (class in scitacean.model) DownloadOrigDatablock (class in scitacean.model) DownloadProposal (class in scitacean.model) DownloadRelationship (class in scitacean.model) DownloadSample (class in scitacean.model) DownloadTechnique (class in scitacean.model) dump() (scitacean.testing.backend.config.ScicatUser method) dump_account_config() (in module scitacean.testing.backend.config) E emails() (in module scitacean.testing.strategies) encoded_data() (scitacean.Thumbnail method) escape_path() (in module scitacean.filesystem) expands_techniques() (in module scitacean.ontology) F fake_client() (in module scitacean.testing.backend.fixtures) FakeClient (class in scitacean.testing.client) FakeDownloadConnection (class in scitacean.testing.transfer) FakeFileTransfer (class in scitacean.testing.transfer) FakeScicatClient (class in scitacean.testing.client) FakeUploadConnection (class in scitacean.testing.transfer) fields() (scitacean.Dataset class method) File (class in scitacean) file_modification_time() (in module scitacean.filesystem) file_size() (in module scitacean.filesystem) file_transfer (scitacean.Client property) (scitacean.Profile attribute) files (scitacean.datablock.OrigDatablock property) (scitacean.Dataset property) FileTransfer (class in scitacean.typing) FileUploadError (class in scitacean) find_technique() (in module scitacean.ontology) from_credentials() (scitacean.Client class method) (scitacean.client.ScicatClient class method) (scitacean.testing.client.FakeClient class method) from_download_model() (scitacean.datablock.OrigDatablock class method) (scitacean.File class method) (scitacean.model.Attachment class method) (scitacean.model.History class method) (scitacean.model.Instrument class method) (scitacean.model.Lifecycle class method) (scitacean.model.MeasurementPeriod class method) (scitacean.model.Proposal class method) (scitacean.model.Relationship class method) (scitacean.model.Sample class method) (scitacean.model.Technique class method) from_download_models() (scitacean.Dataset class method) from_local() (scitacean.File class method) (scitacean.RemotePath class method) from_remote() (scitacean.File class method) from_token() (scitacean.Client class method) (scitacean.client.ScicatClient class method) (scitacean.testing.client.FakeClient class method) G generate() (scitacean.PID class method) get_all_instrument_models() (scitacean.client.ScicatClient method) (scitacean.testing.client.FakeScicatClient method) get_attachments_for_dataset() (scitacean.client.ScicatClient method) (scitacean.testing.client.FakeScicatClient method) get_dataset() (scitacean.Client method) get_dataset_model() (scitacean.client.ScicatClient method) (scitacean.testing.client.FakeScicatClient method) get_instrument_model() (scitacean.client.ScicatClient method) (scitacean.testing.client.FakeScicatClient method) get_logger() (in module scitacean.logging) get_orig_datablocks() (scitacean.client.ScicatClient method) (scitacean.testing.client.FakeScicatClient method) get_proposal() (scitacean.Client method) get_proposal_model() (scitacean.client.ScicatClient method) (scitacean.testing.client.FakeScicatClient method) get_sample() (scitacean.Client method) get_sample_model() (scitacean.client.ScicatClient method) (scitacean.testing.client.FakeScicatClient method) H History (class in scitacean.model) I INITIAL_ATTACHMENTS (in module scitacean.testing.backend.seed) INITIAL_DATASETS (in module scitacean.testing.backend.seed) INITIAL_ORIG_DATABLOCKS (in module scitacean.testing.backend.seed) Instrument (class in scitacean.model) IntegrityError (class in scitacean) is_absolute() (scitacean.RemotePath method) is_on_local (scitacean.File property) is_on_remote (scitacean.File property) is_published (scitacean.datablock.OrigDatablock property) is_relative_to() (scitacean.RemotePath method) items() (scitacean.Dataset method) K keys() (scitacean.Dataset method) L Lifecycle (class in scitacean.model) LinkFileTransfer (class in scitacean.transfer.link) load_file() (scitacean.Thumbnail class method) local_access() (in module scitacean.testing.backend.config) local_is_up_to_date() (scitacean.File method) local_path (scitacean.File attribute) logger_name() (in module scitacean.logging) M make_attachment_upload_models() (scitacean.Dataset method) make_datablock_upload_models() (scitacean.Dataset method) make_model() (scitacean.File method) make_upload_model() (scitacean.datablock.OrigDatablock method) (scitacean.Dataset method) (scitacean.model.Attachment method) (scitacean.model.MeasurementPeriod method) (scitacean.model.Proposal method) (scitacean.model.Relationship method) (scitacean.model.Sample method) (scitacean.model.Technique method) MeasurementPeriod (class in scitacean.model) mime (scitacean.Thumbnail attribute) mime_subtype (scitacean.Thumbnail property) mime_type (scitacean.Thumbnail property) module scitacean.model scitacean.ontology scitacean.testing scitacean.testing.backend scitacean.testing.backend.config scitacean.testing.backend.fixtures scitacean.testing.backend.seed scitacean.testing.client scitacean.testing.docs scitacean.testing.sftp scitacean.testing.sftp.fixtures scitacean.testing.strategies scitacean.testing.transfer scitacean.typing multi_emails() (in module scitacean.testing.strategies) N name (scitacean.RemotePath property) number_of_files (scitacean.Dataset property) number_of_files_archived (scitacean.Dataset property) O orcids() (in module scitacean.testing.strategies) orig_datablocks (scitacean.dataset.DatablockUploadModels attribute) OrigDatablock (class in scitacean.datablock) P packed_size (scitacean.Dataset property) parent (scitacean.RemotePath property) parse() (scitacean.PID class method) (scitacean.Thumbnail class method) PID (class in scitacean) pid (scitacean.PID property) PID_PREFIX (in module scitacean.testing.backend.config) posix (scitacean.RemotePath property) prefix (scitacean.PID property) process_uploaded_dataset() (in module scitacean.testing.client) Profile (class in scitacean) Proposal (class in scitacean.model) Q query_datasets() (scitacean.client.ScicatClient method) R real_client() (in module scitacean.testing.backend.fixtures) Relationship (class in scitacean.model) remote_access_path() (scitacean.File method) remote_gid (scitacean.File attribute) remote_path (scitacean.File attribute) remote_perm (scitacean.File attribute) remote_uid (scitacean.File attribute) RemotePath (class in scitacean) replace() (scitacean.Dataset method) replace_files() (scitacean.Dataset method) require_scicat_backend() (in module scitacean.testing.backend.fixtures) require_sftp_fileserver() (in module scitacean.testing.sftp.fixtures) resolve() (scitacean.RemotePath method) revert_upload() (scitacean.testing.transfer.FakeUploadConnection method) (scitacean.typing.UploadConnection method) S Sample (class in scitacean.model) save_seed() (in module scitacean.testing.backend.seed) scicat (scitacean.Client property) scicat_access() (in module scitacean.testing.backend.fixtures) scicat_backend() (in module scitacean.testing.backend.fixtures) SCICAT_PORT (in module scitacean.testing.backend.config) SciCatAccess (class in scitacean.testing.backend.config) ScicatClient (class in scitacean.client) ScicatCommError (class in scitacean) ScicatCredentials (class in scitacean.testing.backend.config) ScicatLoginError (class in scitacean) ScicatUser (class in scitacean.testing.backend.config) scitacean.model module scitacean.ontology module scitacean.testing module scitacean.testing.backend module scitacean.testing.backend.config module scitacean.testing.backend.fixtures module scitacean.testing.backend.seed module scitacean.testing.client module scitacean.testing.docs module scitacean.testing.sftp module scitacean.testing.sftp.fixtures module scitacean.testing.strategies module scitacean.testing.transfer module scitacean.typing module seed_database() (in module scitacean.testing.backend.seed) seed_worker() (in module scitacean.testing.backend.seed) SelectFileTransfer (class in scitacean.transfer.select) serialize() (scitacean.Thumbnail method) setup_fake_client() (in module scitacean.testing.docs) sftp_access() (in module scitacean.testing.sftp.fixtures) sftp_base_dir() (in module scitacean.testing.sftp.fixtures) sftp_connect_with_username_password() (in module scitacean.testing.sftp.fixtures) sftp_data_dir() (in module scitacean.testing.sftp.fixtures) sftp_fileserver() (in module scitacean.testing.sftp.fixtures) SFTPFileTransfer (class in scitacean.transfer.sftp) SITE (in module scitacean.testing.backend.config) size (scitacean.datablock.OrigDatablock property) (scitacean.Dataset property) (scitacean.File property) skip_if_not_backend() (in module scitacean.testing.backend) source_folder_for() (scitacean.testing.transfer.FakeFileTransfer method) (scitacean.transfer.copy.CopyFileTransfer method) (scitacean.transfer.link.LinkFileTransfer method) (scitacean.transfer.select.SelectFileTransfer method) (scitacean.transfer.sftp.SFTPFileTransfer method) (scitacean.typing.Uploader method) start_backend() (in module scitacean.testing.backend) stop_backend() (in module scitacean.testing.backend) suffix (scitacean.RemotePath property) T Technique (class in scitacean.model) Thumbnail (class in scitacean) to_local() (scitacean.RemotePath method) truncated() (scitacean.RemotePath method) U updated_at (scitacean.datablock.OrigDatablock property) updated_by (scitacean.datablock.OrigDatablock property) upload_files() (scitacean.testing.transfer.FakeUploadConnection method) (scitacean.typing.UploadConnection method) upload_model_type() (scitacean.model.Attachment class method) (scitacean.model.MeasurementPeriod class method) (scitacean.model.Proposal class method) (scitacean.model.Relationship class method) (scitacean.model.Sample class method) (scitacean.model.Technique class method) upload_new_dataset_now() (scitacean.Client method) upload_new_sample_now() (scitacean.Client method) UploadAttachment (class in scitacean.model) UploadConnection (class in scitacean.typing) UploadDatablock (class in scitacean.model) UploadDataFile (class in scitacean.model) UploadDerivedDataset (class in scitacean.model) uploaded() (scitacean.File method) Uploader (class in scitacean.typing) UploadMeasurementPeriod (class in scitacean.model) UploadOrigDatablock (class in scitacean.model) UploadProposal (class in scitacean.model) UploadRawDataset (class in scitacean.model) UploadRelationship (class in scitacean.model) UploadSample (class in scitacean.model) UploadTechnique (class in scitacean.model) url (scitacean.Profile attribute) USERS (in module scitacean.testing.backend.config) V validate() (scitacean.Dataset method) (scitacean.PID class method) (scitacean.RemotePath class method) validate_after_download() (scitacean.File method) validate_dataset_model() (scitacean.client.ScicatClient method) (scitacean.testing.client.FakeScicatClient method) values() (scitacean.Dataset method) W wait_until_backend_is_live() (in module scitacean.testing.backend) without_login() (scitacean.Client class method) (scitacean.client.ScicatClient class method) (scitacean.testing.client.FakeClient class method) without_prefix (scitacean.PID property)
